PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g072220.2.1

Common Name

LOC101260636

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 600aa MW: 67092.7 Da PI: 4.5487

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g072220.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.8	6.3e-51	33	159	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGfrFhPtdeelv +yLk+k+ ++++ l ++i e+d+yk+eP+dLp +k+k+++++w+fFs+rd+ky++g r+nra k+gyWkatgkd+ Solyc04g072220.2.1 33 PPGFRFHPTDEELVLYYLKRKICRRRILL-DAIGETDVYKWEPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARSNRASKHGYWKATGKDR 122 9***********************999.99**********96559999********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++++vg+kktLvfykgrap ge+tdWvmhey++ Solyc04g072220.2.1 123 IITC-NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 159 .999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-59	28	182	IPR003441	NAC domain
PROSITE profile	PS51005	55.39	32	182	IPR003441	NAC domain
Pfam	PF02365	5.0E-27	33	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0070301	Biological Process	cellular response to hydrogen peroxide
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MKVLMDSVAA AASSSPCKEV KVSECFGENS VFPPGFRFHP TDEELVLYYL KRKICRRRIL 60 LDAIGETDVY KWEPEDLPDL SKLKTGDRQW FFFSPRDRKY PNGARSNRAS KHGYWKATGK 120 DRIITCNSRA VGVKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKRCQNV QDYYALYKVF 180 KKSGPGPKNG EQYGAPFREE DWLDDERLNA KVSVQPESPR DQENTAKNIN VVPDPDDAIE 240 ELLKRPFTVD NNFALEQFVQ EEDTESTLLN QSSRDVNLYN HCAVAGPSCQ QYNARASFDL 300 TESGTSPLHL HEAPEVSSAP VNPEKPPYAV EEDFLEDFLE MDDLLVVDPN VQNFDHGTPN 360 GQVFDKPAGN LETLQFDDFD GLSEFDLYHD APSLLDNVGT PVVGQIAEPY MNNFVNGITY 420 PDSTTYMSAF QNDMMNNQQM RLNHENQINN QFWMHDERFG VFNPIEGDQS VVDQSSSGVV 480 NDNNMANYPM GANQNLAKKD DGTQSWFSSN LWAFVDSIPT TPASAAESAL VVNRAFERMS 540 SFSRMKLNVG NMNVAAGNAS ATSSSSGKGK YGLCCISLLG VLCAFLWVVI GTSAKIAGT*

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MKVLMDSVAA AASSSPCKEV KVSECFGENS VFPPGFRFHP TDEELVLYYL KRKICRRRIL  60
LDAIGETDVY KWEPEDLPDL SKLKTGDRQW FFFSPRDRKY PNGARSNRAS KHGYWKATGK  120
DRIITCNSRA VGVKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKRCQNV QDYYALYKVF  180
KKSGPGPKNG EQYGAPFREE DWLDDERLNA KVSVQPESPR DQENTAKNIN VVPDPDDAIE  240
ELLKRPFTVD NNFALEQFVQ EEDTESTLLN QSSRDVNLYN HCAVAGPSCQ QYNARASFDL  300
TESGTSPLHL HEAPEVSSAP VNPEKPPYAV EEDFLEDFLE MDDLLVVDPN VQNFDHGTPN  360
GQVFDKPAGN LETLQFDDFD GLSEFDLYHD APSLLDNVGT PVVGQIAEPY MNNFVNGITY  420
PDSTTYMSAF QNDMMNNQQM RLNHENQINN QFWMHDERFG VFNPIEGDQS VVDQSSSGVV  480
NDNNMANYPM GANQNLAKKD DGTQSWFSSN LWAFVDSIPT TPASAAESAL VVNRAFERMS  540
SFSRMKLNVG NMNVAAGNAS ATSSSSGKGK YGLCCISLLG VLCAFLWVVI GTSAKIAGT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-47	32	188	20	174	NAC domain-containing protein 19
3swm_B	1e-47	32	188	20	174	NAC domain-containing protein 19
3swm_C	1e-47	32	188	20	174	NAC domain-containing protein 19
3swm_D	1e-47	32	188	20	174	NAC domain-containing protein 19
3swp_A	1e-47	32	188	20	174	NAC domain-containing protein 19
3swp_B	1e-47	32	188	20	174	NAC domain-containing protein 19
3swp_C	1e-47	32	188	20	174	NAC domain-containing protein 19
3swp_D	1e-47	32	188	20	174	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00179	DAP	Transfer from AT1G34190	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU326400	0.0	S.lycopersicum DNA sequence from clone SL_MboI-39E17 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237849.1	0.0	PREDICTED: uncharacterized protein LOC101260636
TrEMBL	K4BTK9	0.0	K4BTK9_SOLLC; Uncharacterized protein
STRING	Solyc04g072220.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3212	24	51
Representative plant	OGRP9932	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-117	NAC domain containing protein 17

Link Out ? help Back to Top
Phytozome	Solyc04g072220.2.1
Entrez Gene	101260636

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]